CDS

Accession Number TCMCG057C26171
gbkey CDS
Protein Id XP_018492266.1
Location join(27294468..27294574,27294655..27294841,27294945..27295058,27295157..27295361,27295436..27295473,27295552..27295686,27295774..27295926,27296026..27296146,27296240..27296345,27296434..27296617,27296700..27296860,27296951..27297258,27297333..27297604,27297690..27298216,27298297..27298391,27298486..27298721,27298815..27299024,27299107..27299574,27299651..27299923,27300012..27300338,27300419..27300551,27300633..27300744,27300838..27301042)
Gene LOC108862588
GeneID 108862588
Organism Raphanus sativus

Protein

Length 1558aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018636764.1
Definition PREDICTED: endoribonuclease Dicer homolog 3-like isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Ribonuclease-III-like
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11592        [VIEW IN KEGG]
EC -
KEGG_Pathway ko05206        [VIEW IN KEGG]
map05206        [VIEW IN KEGG]
GOs GO:0002252        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003725        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004525        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009616        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010216        [VIEW IN EMBL-EBI]
GO:0010267        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016442        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016891        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031332        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032296        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035821        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044003        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044403        [VIEW IN EMBL-EBI]
GO:0044419        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051214        [VIEW IN EMBL-EBI]
GO:0051607        [VIEW IN EMBL-EBI]
GO:0051701        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051817        [VIEW IN EMBL-EBI]
GO:0052018        [VIEW IN EMBL-EBI]
GO:0052249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0098586        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAGGAGACGAAACTCGTGGAGGAGGAGGAAGCAATTCTGTTTCCGCGAAGAGGAAATTCTCTGAAATCGATGAAGATTCTTCTTCTTCTTCGATGATAAACATTTCCGAGTTGAAGACGTACGAGGTAGTTGCACAGACCAGGAACACTATTGTTCTTCTGGAGGAGACAGGAACTGATAAGTTTGGGGTTATCAACTTTCTCATAAAATCAGCCATGCCTCCTTCTTCCTCTGATTCCGACAAAAGATTCATCATTTGCTTGGCCCCTACTGTCAATCTTGTCAAACAGCATTGCTGTGAGATCAGAGCTCATTTAAATCTGAAGGTTGAAGACTACTTTGGAGCTAAAGGAGTTGATAAGTGGACCTCACACCGCTGGGAACAGGAACTTTCCAACAATCAGGTTCTAGTTATGACTCCTCAAATATTGCTAGACGCCCTTAGAGGTGGATTCCTGAAACTAGAGATGGTACGCCTTCTTGTAATAGATGAATGCCACCGCACCACTGGCAATCATCCTTATGCTATGATTATGAAGGAGTTCTATCACAAATCTACTGACAAACCGAGGATGTTTGGATTGACTACTACAGACGCCATTAGAAAAGATCAAGTATCAGAACTGGAGAACCTCATGGACTCGCAGATTTTTAATCCTCAAAGGCAGAAAGGGGTGGTGGACAAGTCTGCCGCAAAAGTAAAAGAAGGTCCAGTGTTTTATGACCCACCACCTTTCTGCTATTTAGAACTGAAAGATAAGTTGCGAACTTCACACCTCAAGTTTGATGCTTCTCTGTTAAGGCTTCAAGAAATGGAAGAAGGCAACTGTCAGGACACGGAGAATAAGTGTGAGGCATACCAAAAACGATTGTCCAGAGACTACAACGATATTTTGCATTGCCTTGATAGTCTTGGCCTGATTTGCGCTCATTTGGCGGCTGAAATCTGCTTGGAGAAAATCTCGGAAACCGAAACTAATGAAGAAGAATGCTCAATGGTGTACAAGCATTTTCTTAGTGATGTTTTATCAACACTTGGGCTGTTTTTGCAGCAAGAAGAAAAGAATTCGGTAGATTTGCAGCAAGTCAATCCGTCAGCAGTGATTTCGGGACTTGTTTCTCGAAAGTTACAAGAACTTCTCCATCTATTGGATTCATTGAGAGGTGAAACGCAAAAGCCATGTCTTATTTTAGTTGAGAGAATCATAACTGCAGTAGTGATCGAAAGATACGTGAAGCAACAAGCCTCTTTAGGTTACCTTTACGTTTTACATTTAATCGGAAACAACGCCTCTACCCATGATGCACTGGCTCAGAAAATGCAAGATTCATTTCATGTTGGCAAGGTAAATGTTTTATTCATCACTGATGTGGTCGAAGAAGGGTTTCACATGCCAGACTGCTCATGCATGATATGTTTTGACCTGCCCAAAACAGTGCGTAGTTACTCGCAGTCTCAAGAACTGGCCAAACAGAGTAACTCTAAATCTATTATGTTTCTTGAAAGGGGGAACTCGAGCCAAAGAGATCATCTGTATGACCTTATGCGAAGAGAAGTACCAGTGCGAGATCAAGAAACTCCAAACCTGAGATTGTGTCCACCTCCGGAAGCGAATGGCCAGGACGTGAAAGAGAATGGAGCCACGGTTACTCCAGATTCTAACACCACTGTTACTGATGAACCAGCGCCAAAAGAGCAGTCGGCGAATAAAAAGTTACGTCAACACGAAGTGGTGGACAAGAATCTACTACCGTGCAGCGCCAAAGAGAAGGCCACCACCCCTTCTAAAAGTAAATCATCTTCGTCGGCTGCAGGTTCTAAAAAGCGGAAGGAGTTGCACGGGACAACCCGTGCAAACGCGTTGTCAGGAACCTGGGGAGAAAATCTTGATGGCGCCGTCTTTCAGGCTTATAAACTGGACTTCCGGAGTAATATCTCTGGGGACGCGTACTCGAGCTTCTCTCTTCTGATTGAGTCAACCCTTGCCGATGATGTTGGTAACGTCGAGATGGACCTTTACTTGGTCAGGAGGTTTATAAAGGCTTCTGTTTCACCTTGTGGCCAGATACGTTTGAGTCAAGAAGAGATGGTCAAAGCAAAGTGTTTTCAGCAATTCTTCTTCAACGGCATGTTTGGAAAGTTGTTTGTTGGATCCAAGTCACTGGGGACAAAGAGAGAGTTTTTGCTTCAAACTGACACAAGCTCTCTTTGGGATCCTTCCTTTATGTTTCTACTGCTACCGGTTGAGACCGGTGATCAAGCTTCGAGTGCAACGACGGTTGATTGGTCAGCGATCAACTCCTGTGCCTGTGTAGTTGATTTCCTGAAGAACAACTCCCTTTTAGAACTTCAGGTTGGTGATGATGAAAATCATCACTGCGACACCTCACCCGGTCAGGAAGTTTTACAAAAGAAAGAAACGGAGACGAATCTGATTCATTTCGCCAACGCTTCGTCTGATAAAAACAGCATCGAAGAGATTGTGGTCGTTGCAATTCACACCGGGAGGATATACTCTATAGTTGAAGCGGTTAAAGATTCTTCTGCTATGAGCCCGTTTGAGGACGAGGCCTCTTTAGAATATGCTACTTATGCAGAATATTTTAATAAAAAGTATGGGATCGTACTGGCGCACCCGAACCAGCCATTGTTGAAGTTGAAGCAGAGTCACCACGCGCACAACCTCTTAGTCAACTTCAGTGAAGAAGTGATTGAGAAGAAAGAACCAAAAGTTGGTGGTAACGTTAGAAAAGCAAAACCGAACATCCACGCTCATTTGCCTCCGGAGCTTTTGGTAAGAATCGACGTACCACGTTCCGTGACAAAATCAATCTACTTACTACCATCAGTGATGCACCGCCTAGAGTCTCTAATGTTGGCCAGCCAACTTAGAGAAGAGATTGGTTGTTGTAGCGTCGATAACTTCAGTATATCTAGTACATCGGTTCTTGAAGCAGTTACAACACTTACAAGCGCTGAAGCGTTTTCCATGGAACGTTTGGAACTGCTTGGTGATTCGGTGTTGAAGTATGTTGTGAGCTGTTCTCTATACCTTAAGTATCCTAACAAAGACGAGGGACAGCTTTCGCGTCAGAGGCAATCGATTATATCTAACTCCAATCTTCACCGCTTGGCTACAGATCGCAAACTACAGGGATACATAAGAAACGGCGCGTTTGAACCGCGTCGGTGGACCGCACCTGGTCAATACTCTCTCTTCCCCGTTCCTTGCAAGTGTGGGATTGATACTCGAGAAGTACCGTTGGAGCCAAGATTCTTCACAGAGAACATGACTATAAAAATTGGCAAGTCTTGCGACGTGGGGCACAGGTGGACGGTTTCGAAGTCCGTATCAGATTGCGCCGAGGCACTGATTGGTGCCTATTACGTTAGCGGTGGATTGGATGGGGCTCTTCACGTGATGAAATGGCTTGGCGAAGACGTTGGATTTGACAGAGAGCTAGTGAACGAAGCCATAAACAGAGTTTCTCTACGGTGTTACGTCCCTAAAGACGGTGAGCTAACGGAGCTGGAGGCAAAGATCGGACGTGAGTTCTCTTCGAAGTTTCTTTTGAAAGAGGCTATCACACACACGTCTGTTCATGAGTCATACTCCTACGAGAGATTGGAGTTTCTTGGCGATTCCGTGCTGGATTTTCTAATCACCAGACATCTCTTCAACACCTACGAAAAGACAGGGCCTGGAGAGATGACAGATCTTCGTTCTGCATGTGTAAACAACGAGAACTTCGCGCAGGTTGCGGTAAAAAACAATCTGCATACCCACCTTCAACGCTGTTCAACGGTTCTCGAGACTCAAATAAAAGAGTATCTGATGTCGTTTTCAAAGCCAGATGAGACTGGTAGAACAATCCCTTCAATACAAGGACCTAAGGCGCTTGGGGACGTGGTGGAGAGTATCGCTGGAGCACTGCTGATCGATACGAGGTTAGATCTTGATGAAGTGTGGAGAGTGTTTGAGCCGTTGCTTTCTCCGCTTGTGACGCCTGATAAACTTCAGCTTCCTCCATACCGAGAGCTCAGTGAGCTATGCGACTCTCTCGGGTATTTCTTCCGTGTGAAATGCGCAAATGATGGTGTCAAGGCACAAGCCACGATCCAGTTACAGCTGGACGATGTTCTTTTGATTGGAGATGGATCTGAACAGACAAATAAACTGGCTCTGGGAAAAGCAGCTTCCCATCTTCTTAAGCAACTCGAGAAGAGAAACATTTCACGTAAAACTCTGAACGGGGATGATCAAAGCTCCATGGATATGAAACTTGCTTGCAATCTTAGCGACAGAGAAACTCCGTCTTCAGATTCTATCGAAATGCAGAGCACAGTGGTTCCAGTTATTGGACCTATAAACATGAAGAAAGGAGGGCCGCGTGGAACACTACATGAGTTCTGCAAGAAACATCTCTGGCCAATGCCTACTTACGACACTTTAGAAGAGAAGTCTCGAACTCCGTTTGAATTCACAGATGGCAATGAGAAGCGGACTAGTTTCAGCAGTTTCGTATCGACTATAACCCTGAGGATACCTAATCGTGAGGCTGTGATGTATTCCGGAGAAGCCAGGCCTGACAAGAAGAGTTCCTTCGACTCTGCAGTCGTGGAACTTCTCTATGAGCTCGAGCGCCGCATGATCCTCACTATAAAAATGTAA
Protein:  
MEGDETRGGGGSNSVSAKRKFSEIDEDSSSSSMINISELKTYEVVAQTRNTIVLLEETGTDKFGVINFLIKSAMPPSSSDSDKRFIICLAPTVNLVKQHCCEIRAHLNLKVEDYFGAKGVDKWTSHRWEQELSNNQVLVMTPQILLDALRGGFLKLEMVRLLVIDECHRTTGNHPYAMIMKEFYHKSTDKPRMFGLTTTDAIRKDQVSELENLMDSQIFNPQRQKGVVDKSAAKVKEGPVFYDPPPFCYLELKDKLRTSHLKFDASLLRLQEMEEGNCQDTENKCEAYQKRLSRDYNDILHCLDSLGLICAHLAAEICLEKISETETNEEECSMVYKHFLSDVLSTLGLFLQQEEKNSVDLQQVNPSAVISGLVSRKLQELLHLLDSLRGETQKPCLILVERIITAVVIERYVKQQASLGYLYVLHLIGNNASTHDALAQKMQDSFHVGKVNVLFITDVVEEGFHMPDCSCMICFDLPKTVRSYSQSQELAKQSNSKSIMFLERGNSSQRDHLYDLMRREVPVRDQETPNLRLCPPPEANGQDVKENGATVTPDSNTTVTDEPAPKEQSANKKLRQHEVVDKNLLPCSAKEKATTPSKSKSSSSAAGSKKRKELHGTTRANALSGTWGENLDGAVFQAYKLDFRSNISGDAYSSFSLLIESTLADDVGNVEMDLYLVRRFIKASVSPCGQIRLSQEEMVKAKCFQQFFFNGMFGKLFVGSKSLGTKREFLLQTDTSSLWDPSFMFLLLPVETGDQASSATTVDWSAINSCACVVDFLKNNSLLELQVGDDENHHCDTSPGQEVLQKKETETNLIHFANASSDKNSIEEIVVVAIHTGRIYSIVEAVKDSSAMSPFEDEASLEYATYAEYFNKKYGIVLAHPNQPLLKLKQSHHAHNLLVNFSEEVIEKKEPKVGGNVRKAKPNIHAHLPPELLVRIDVPRSVTKSIYLLPSVMHRLESLMLASQLREEIGCCSVDNFSISSTSVLEAVTTLTSAEAFSMERLELLGDSVLKYVVSCSLYLKYPNKDEGQLSRQRQSIISNSNLHRLATDRKLQGYIRNGAFEPRRWTAPGQYSLFPVPCKCGIDTREVPLEPRFFTENMTIKIGKSCDVGHRWTVSKSVSDCAEALIGAYYVSGGLDGALHVMKWLGEDVGFDRELVNEAINRVSLRCYVPKDGELTELEAKIGREFSSKFLLKEAITHTSVHESYSYERLEFLGDSVLDFLITRHLFNTYEKTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCSTVLETQIKEYLMSFSKPDETGRTIPSIQGPKALGDVVESIAGALLIDTRLDLDEVWRVFEPLLSPLVTPDKLQLPPYRELSELCDSLGYFFRVKCANDGVKAQATIQLQLDDVLLIGDGSEQTNKLALGKAASHLLKQLEKRNISRKTLNGDDQSSMDMKLACNLSDRETPSSDSIEMQSTVVPVIGPINMKKGGPRGTLHEFCKKHLWPMPTYDTLEEKSRTPFEFTDGNEKRTSFSSFVSTITLRIPNREAVMYSGEARPDKKSSFDSAVVELLYELERRMILTIKM